PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC074126.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 157aa    MW: 18342.8 Da    PI: 9.738
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC074126.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-055277123
                  EEET..TTTEEESSHHHHHHHHHH.T CS
       zf-C2H2  1 ykCp..dCgksFsrksnLkrHirt.H 23
                  ++C    C   Fs+ksnL++H +  H
  EcC074126.10 52 FRCDveGCLHIFSTKSNLRQHVKAvH 77
                  899999***************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355402041IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.92E-83494No hitNo description
Gene3DG3DSA:3.30.160.602.6E-75277IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.6355282IPR007087Zinc finger, C2H2
SMARTSM003550.00145277IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805477IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.5E-478106IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003552783109IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028085109IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
KYFSNVDYLK EHMRSAHQLV NCDICGTKQL RKNIQRHLHT HEKKNSADSE AFRCDVEGCL  60
HIFSTKSNLR QHVKAVHLEV RPFVCGHKDC GKKFAYKHVR DHHEKTGCHV YTSGDFEELD  120
GQFRSRPRGG RKRKCPTNES LLRKRVTLPN ELDFLSN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125133RPRGGRKRK
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010034379.11e-103PREDICTED: transcription factor IIIA
SwissprotQ84MZ43e-53TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A059DCN01e-100A0A059DCN0_EUCGR; Uncharacterized protein
STRINGXP_010034379.11e-102(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47142852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.12e-56transcription factor IIIA