PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC074238.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

GRAS

Protein Properties

Length: 172aa MW: 20059.3 Da PI: 8.8297

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC074238.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	129.4	4.2e-40	10	167	216	373
GRAS 216 esvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetl 312 +++ ++ +rd vL+l+ s++P+++++ ++ ++n++ F++rf eal + sa++d l++++ +++ +r+++Er ++g+ei+n+vaceg er+e+ et+ EcC074238.10 10 NRGVTKCQRDMVLNLIGSMKPQIFIHGIKNGSYNAPFFVTRFREALFHLSAIYDLLDTTVVHNNVQRSVLERDVFGQEIMNIVACEGLERVEKPETY 106 344444589************************************************************************************** PP GRAS 313 ekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 ++ + rl+++GF+++pl+++ +k+ ++ l+ + + +++eee+++++lgW++r + +++W EcC074238.10 107 KQRQLRLTRVGFQQLPLDQELMKKTRAKLSGNYRKDFELEEENNWMLLGWRGRIISCCTCW 167 *****************************888*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	20.201	1	148	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.4E-37	10	167	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
RPCHALLLEN RGVTKCQRDM VLNLIGSMKP QIFIHGIKNG SYNAPFFVTR FREALFHLSA 60 IYDLLDTTVV HNNVQRSVLE RDVFGQEIMN IVACEGLERV EKPETYKQRQ LRLTRVGFQQ 120 LPLDQELMKK TRAKLSGNYR KDFELEEENN WMLLGWRGRI ISCCTCWLSA IV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010043520.1	3e-96	PREDICTED: scarecrow-like protein 34
Refseq	XP_018724289.1	3e-96	PREDICTED: scarecrow-like protein 34
Refseq	XP_018724290.1	3e-96	PREDICTED: scarecrow-like protein 34
Refseq	XP_018724291.1	3e-96	PREDICTED: scarecrow-like protein 34
TrEMBL	A0A059D471	1e-103	A0A059D471_EUCGR; Uncharacterized protein
STRING	XP_010043520.1	1e-95	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15599	6	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	3e-56	SCARECROW-like 14