PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC074854.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WOX
Protein Properties Length: 109aa    MW: 12770.1 Da    PI: 10.3557
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC074854.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.1e-1840101257
                   T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
      Homeobox   2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                   ++R+t+t++q+++L++l+++   r p+a+++++++++l    +++ ++V++WFq ++a+e++
  EcC074854.10  40 STRWTPTTDQIRILKDLYYNygVRSPTADQIQRISARLrqygKIEGKNVFYWFQKHKARERQ 101
                   58*****************878**************************************97 PP
2Wus_type_Homeobox111.73.9e-3639103265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++tRWtPt++Qi+iL++ly+  G+r+P++++iqri+a+L++yGkie+kNVfyWFQ +kaRerqk+
       EcC074854.10  39 SSTRWTPTTDQIRILKDLYYnYGVRSPTADQIQRISARLRQYGKIEGKNVFYWFQKHKARERQKK 103
                        789***************9868*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-619101IPR009057Homeodomain-like
SuperFamilySSF466898.13E-1122103IPR009057Homeodomain-like
PROSITE profilePS500719.47536102IPR001356Homeobox domain
SMARTSM003890.001338106IPR001356Homeobox domain
PfamPF000465.5E-1641101IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MEPQQQQQHQ NQEDMNCSNN NGGKGGGTSS SSSYACRQSS TRWTPTTDQI RILKDLYYNY  60
GVRSPTADQI QRISARLRQY GKIEGKNVFY WFQKHKARER QKKRFFSPD
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). May induce shoot stem cells activity in order to maintain the stem cell identity (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010033485.26e-52PREDICTED: protein WUSCHEL
SwissprotQ6YBV19e-45WUS_ANTMA; Protein WUSCHEL
TrEMBLA0A076FRH21e-50A0A076FRH2_EUCGR; Wuschel
STRINGXP_010033485.12e-50(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52442847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.13e-37WOX family protein