PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC076057.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

FAR1

Protein Properties

Length: 239aa MW: 27445.5 Da PI: 9.2407

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC076057.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	78.1	1.6e-24	9	94	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY+eYA++vGF +++++s++sk++g++++ + Cs+ g+++e++++ ++r+ +t+Cka +++k+++dg w ++++++eHnH++ EcC076057.10 9 SFYREYARSVGFGITIKASRRSKKSGKFIDVKIACSRFGSKRESSST----VHPRPCMKTNCKAGMNMKRREDGIWIIYSVVKEHNHDID 94 5***************************************99887....99********************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.0E-21	9	94	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.5E-11	177	239	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
FQTKEAAYSF YREYARSVGF GITIKASRRS KKSGKFIDVK IACSRFGSKR ESSSTVHPRP 60 CMKTNCKAGM NMKRREDGIW IIYSVVKEHN HDIDPDDFYN SLWGRTKQVG GLAYQKKGLQ 120 AFLNEEDTQV MLEHFMSMQQ ENPNFFYAVD LGPDKCLRNV FWVDAKGRHD YGSFCDVVYF 180 DIFYVKEKYG IPFLPIVGVN HHAQYLLLGC ALIGAEGKLS YSWVMQAWLN AMGHQAPKV

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018727910.1	1e-175	PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X2
Swissprot	Q3EBQ3	1e-103	FRS2_ARATH; Protein FAR1-RELATED SEQUENCE 2
TrEMBL	A0A059DCQ8	1e-175	A0A059DCQ8_EUCGR; Uncharacterized protein (Fragment)
STRING	XP_010044813.1	1e-175	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32250.3	1e-105	FAR1-related sequence 2

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]