PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC076898.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

MYB_related

Protein Properties

Length: 161aa MW: 17615.3 Da PI: 10.5957

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC076898.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34.5	4.6e-11	5	34	1	30
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIart 30 +++WT+eE+e l +v+++G+g Wk I r EcC076898.10 5 KQKWTQEEEEALRAGVAKHGTGKWKDIQRD 34 79*************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.668	1	51	IPR017930	Myb domain
SuperFamily	SSF46689	1.65E-11	2	50	IPR009057	Homeodomain-like
Pfam	PF00249	3.9E-8	5	32	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.5E-11	5	50	IPR009057	Homeodomain-like
CDD	cd11660	5.82E-16	6	50	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
MGNPKQKWTQ EEEEALRAGV AKHGTGKWKD IQRDPEFNKF LFSRSNIDLK VSPPRPSVLS 60 LSPILVANPS SGDLAGMVSR CRRSRRALPV TRSETGARVS VGSALEVFVK MSIWARSLLK 120 ATEVGALRSL IETPACLCRA GFRGVVKDAR DDISICVDHA V

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16580	8	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49950.3	2e-18	telomere repeat binding factor 1