PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC077591.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family LBD
Protein Properties Length: 216aa    MW: 22867.1 Da    PI: 8.6035
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC077591.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.65e-39421431101
        DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 
                   +C aCk+lrrkC ++C++apyf ++q ++kfa+vh +FGasnv+kll ++p ++r+da+ +++yeA+ar+ dPvyG+v++il+lqqq+++l+ael+l
  EcC077591.10  42 PCGACKFLRRKCIHGCIFAPYFGSDQgAAKFAAVHMVFGASNVSKLLLHIPVNRRQDAVVTITYEAQARLADPVYGCVSTILALQQQVATLQAELSL 138
                   7***********************9989********************************************************************* PP

        DUF260  97 lkeel 101
                   ++++l
  EcC077591.10 139 VQTQL 143
                   *9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.91441143IPR004883Lateral organ boundaries, LOB
PfamPF031951.7E-3842140IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MDRMQGDGMS GDRRRGRSTA RRAIPPGELP AEEMTAPPPG APCGACKFLR RKCIHGCIFA  60
PYFGSDQGAA KFAAVHMVFG ASNVSKLLLH IPVNRRQDAV VTITYEAQAR LADPVYGCVS  120
TILALQQQVA TLQAELSLVQ TQLMSSRYAV ASAFQAPEMQ QPQPAAHPCH LPMLQPEYSN  180
NSSATSNNFI NISSFAATAA AATNNFAVAA AAAASS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-40351494115LOB family transfactor Ramosa2.1
5ly0_B2e-40351494115LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010036253.11e-115PREDICTED: LOB domain-containing protein 20
SwissprotQ9SRV34e-69LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A059A0U51e-102A0A059A0U5_EUCGR; Uncharacterized protein
STRINGXP_010036253.11e-114(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.14e-52LOB domain-containing protein 20