PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC079046.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HSF
Protein Properties Length: 295aa    MW: 33856.7 Da    PI: 5.2679
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC079046.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.72.2e-34141052102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+ye+++ ++++ ++sws++++sfvv+++ efa+++Lp+yFkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F +g+ +ll++i+
  EcC079046.10  14 FLVKTYEMVDAASTDPVVSWSQSSKSFVVWNPPEFARDLLPRYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANDDFVRGQPQLLKNIH 101
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
  EcC079046.10 102 RRKP 105
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.77E-359103IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.109.3E-3810103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.3E-6210103IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.7E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.5E-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.5E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.5E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MDESPSGSNS LPPFLVKTYE MVDAASTDPV VSWSQSSKSF VVWNPPEFAR DLLPRYFKHN  60
NFSSFIRQLN TYGFRKIDPE RWEFANDDFV RGQPQLLKNI HRRKPVHSHS LQNLQNQGSS  120
SPLTEAERQG LKEEVERLKG DKESLQLELQ VHEEERKGFE VQMQNLKGRL LKMEERQKNM  180
VSNLGNVLQK PGLALNMLIE SEFNDKKRRL PRIGYYHDEG HGEDNHAGTP QTLTRENIDG  240
ASSLPSILDL YEQLESSLTI WEYIAHDCEN FGQRNSTLDF DETTSCADSP AISCI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-25610321129Heat shock factor protein 1
5d5v_B3e-25610321129Heat shock factor protein 1
5d5v_D3e-25610321129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010057144.10.0PREDICTED: heat stress transcription factor A-4c
SwissprotO494031e-102HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLA0A059C7E80.0A0A059C7E8_EUCGR; Uncharacterized protein
STRINGXP_010057144.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28532868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.14e-95heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]