PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC081246.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 156aa    MW: 18229.5 Da    PI: 9.6855
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC081246.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.92.2e-173382255
           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                   y+G+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  EcC081246.10 33 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYATPMAAARAYDTAVFYLRG 82
                  69*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.3E-343396IPR001471AP2/ERF domain
PROSITE profilePS5103222.1683390IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-213391IPR016177DNA-binding domain
PfamPF008474.1E-113482IPR001471AP2/ERF domain
CDDcd000181.61E-253492No hitNo description
Gene3DG3DSA:3.30.730.102.2E-303491IPR001471AP2/ERF domain
PRINTSPR003677.0E-123445IPR001471AP2/ERF domain
PRINTSPR003677.0E-127292IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006508Biological Processproteolysis
GO:0007018Biological Processmicrotubule-based movement
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003777Molecular Functionmicrotubule motor activity
GO:0005524Molecular FunctionATP binding
GO:0008017Molecular Functionmicrotubule binding
GO:0008234Molecular Functioncysteine-type peptidase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MTMESERYDE TTEEQRIKRR PHQQQQQQRR QKPYRGIRMR KWGKWVAEIR EPNKRSRIWL  60
GSYATPMAAA RAYDTAVFYL RGPSARLNFP DLIWREGEDS LGEVSATSIR RRAAEVGAQV  120
DAVQAAAAKS RPCCAPDLNE YPKLEDLEEF HRESVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-153090263ATERF1
3gcc_A4e-153090263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010061728.18e-89PREDICTED: ethylene-responsive transcription factor RAP2-1
SwissprotQ8LC302e-49RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1
TrEMBLA0A059BRX12e-87A0A059BRX1_EUCGR; Uncharacterized protein
STRINGXP_010061728.13e-88(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.12e-40DREB and EAR motif protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]