PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC081246.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 427aa    MW: 48523.1 Da    PI: 8.6632
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC081246.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.0001170193123
                   EEETTTTEEESSHHHHHHHHHH.T CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                   y+C+ Cg+ ++++ +LkrH +  H
  EcC081246.20 170 YVCKVCGRKCKTNLDLKRHFKQlH 193
                   9******************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10101.9E-790160IPR029060PIN domain-like
SuperFamilySSF576678.29E-5163198No hitNo description
SMARTSM003550.004170193IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.032170198IPR007087Zinc finger, C2H2
PROSITE patternPS000280172193IPR007087Zinc finger, C2H2
CDDcd061679.46E-13182324No hitNo description
Gene3DG3DSA:3.40.50.10101.9E-7255322IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006508Biological Processproteolysis
GO:0007018Biological Processmicrotubule-based movement
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003777Molecular Functionmicrotubule motor activity
GO:0005524Molecular FunctionATP binding
GO:0008017Molecular Functionmicrotubule binding
GO:0008234Molecular Functioncysteine-type peptidase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MNPLCKALDS LPVKPPPLPL NPPLRLQSAG SLRFSRSSFL SSPGNRKFRP TLVSKAPPGC  60
LGALRSAPVR ASAGADIDMV KNKQGVYAPK QKKVVVLWDL DNKPPRGPPF QAATALRRVA  120
ENFGDVVEMS AYANRHAFIH LPQWVVEERH ERKRLDILER KGVVTPAEPY VCKVCGRKCK  180
TNLDLKRHFK QLHERERQKK LNRMRSLKGK KRQKYREKYI AGNHKYNEAA RVLIKPKVGY  240
GLASELRRAG VFVKTVEDKP QAADWALKRQ MQHSMSRRID WLFLVSDDSD FSEMLRKARE  300
ANLGTVVVGD WDRALGRHAD LWVPWNGVEN GEVTEKDLVP NRRREREDAE GEDGFFSLSV  360
FDEDVDGDSD LDNVVNELVA GRSEIGSMRN SVFSEGEDEE EEDEWDTVEV PNGFVLGYSE  420
DEEDVYF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010061727.10.0PREDICTED: uncharacterized protein LOC104449308
TrEMBLM5XCQ90.0M5XCQ9_PRUPE; Uncharacterized protein
STRINGXP_010061727.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.11e-163C2H2-like zinc finger protein