PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS504776.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 105aa    MW: 12358 Da    PI: 9.6324
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS504776.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM95.77.2e-309103194
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                   lp+G rF+Pt+eelv++yLk k+ g+k  + ++i+evd++++ PwdLpk  +++++ + w+fF++ ++ky+++kr++r+ ++g Wk tg+++++ +
  EcS504776.10   9 LPVGWRFRPTEEELVNHYLKLKILGDKKVE-KIIPEVDVHQLPPWDLPKlsSINSDGDGWFFFCRLQNKYPQSKRTRRTNDHGSWKPTGENRKIRT 103
                   799**********************99555.89***************5457788889***********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-306103IPR003441NAC domain
PROSITE profilePS5100531.4979105IPR003441NAC domain
PfamPF023654.1E-1410100IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
STDISLVDLP VGWRFRPTEE ELVNHYLKLK ILGDKKVEKI IPEVDVHQLP PWDLPKLSSI  60
NSDGDGWFFF CRLQNKYPQS KRTRRTNDHG SWKPTGENRK IRTQD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-18710113105Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269|PubMed:17947243, ECO:0000269|PubMed:18443413, ECO:0000269|PubMed:22826500, ECO:0000269|PubMed:24329768}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018718756.14e-68PREDICTED: protein NTM1-like 9 isoform X4
SwissprotF4JN351e-30NTL9_ARATH; Protein NTM1-like 9
TrEMBLA0A059DC642e-53A0A059DC64_EUCGR; Uncharacterized protein
STRINGXP_010029942.13e-66(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19821971
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.35e-33NAC transcription factor-like 9
Publications ? help Back to Top
  1. Zheng XY, et al.
    Spatial and temporal regulation of biosynthesis of the plant immune signal salicylic acid.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(30): p. 9166-73
    [PMID:26139525]
  2. Guo T, et al.
    Lamin-like Proteins Negatively Regulate Plant Immunity through NAC WITH TRANSMEMBRANE MOTIF1-LIKE9 and NONEXPRESSOR OF PR GENES1 in Arabidopsis thaliana.
    Mol Plant, 2017. 10(10): p. 1334-1348
    [PMID:28943325]