PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS504980.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 120aa    MW: 14481.7 Da    PI: 9.7139
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS504980.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS103.23.7e-321118257374
          GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrvee 353
                   f ea +++s lfd+l++ +pre++er+ +E+e+lgr++ n +aceg er+er e++++W+ r ++aGF +vpls +  + +   ++ ++ + + v+e
  EcS504980.10   1 FREASHHFSFLFDMLDTIIPRENQERMLIEKEMLGRQALNTIACEGWERVERPESYKQWQLRNMRAGFVQVPLSRRLKQFVFNEMASHYHKDFVVDE 97 
                   789*************************************************************************9998888888888777***** PP

          GRAS 354 esgslvlgWkdrpLvsvSaWr 374
                     ++l+lgWk+r L+++S W+
  EcS504980.10  98 VGKWLLLGWKGRFLFAFSTWK 118
                   ********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035141.3E-291118IPR005202Transcription factor GRAS
PROSITE profilePS5098518.11198IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
FREASHHFSF LFDMLDTIIP RENQERMLIE KEMLGRQALN TIACEGWERV ERPESYKQWQ  60
LRNMRAGFVQ VPLSRRLKQF VFNEMASHYH KDFVVDEVGK WLLLGWKGRF LFAFSTWKPA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010037827.18e-80PREDICTED: scarecrow-like protein 9
SwissprotO809334e-47SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A059A7G01e-78A0A059A7G0_EUCGR; Uncharacterized protein
STRINGXP_010037827.13e-79(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15599616
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.12e-49GRAS family protein