PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS505036.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 143aa    MW: 16850.2 Da    PI: 9.38
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS505036.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM107.12.1e-33148853128
           NAM  53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                   +++ ewyfF +rd+ky++g r+nrat++gyWk+tgkd++v+s +++ +g+kktLv+y+grap+g++tdWvmheyrl
  EcS505036.10  14 SRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRKVTS-QNRPIGMKKTLVYYRGRAPQGVRTDWVMHEYRL 88 
                   4678**************************************.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100535.8371115IPR003441NAC domain
SuperFamilySSF1019411.07E-36395IPR003441NAC domain
PfamPF023651.2E-171688IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
CHVTDLVEKS FLPSRDPEWY FFGPRDRKYP NGFRTNRATR AGYWKSTGKD RKVTSQNRPI  60
GMKKTLVYYR GRAPQGVRTD WVMHEYRLDD KESEDTSGMQ VQFADVVLKC SMTFSPSLCN  120
AFILSQHLLF YDDQFKMQEI LFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-3158859140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269|PubMed:25081480}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010069496.11e-65PREDICTED: NAC domain-containing protein 86
SwissprotA4VCM01e-44NAC45_ARATH; NAC domain-containing protein 45
TrEMBLA0A059AW313e-64A0A059AW31_EUCGR; Uncharacterized protein
STRINGXP_010069496.14e-65(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85042839
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.16e-62NAC domain containing protein 57
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]