PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS506274.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 110aa    MW: 12743.5 Da    PI: 5.241
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS506274.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS804.2e-258109123222
          GRAS 123 lQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldes 217
                   lQWp L q+L+s++egp +lRiT ++ p  g   +e++eetg+rL+k++e+++vpfefn++++k++e+++l++L+++++E++aVn+    ++l+de+
  EcS506274.20   8 LQWPILVQKLSSQSEGPCKLRITDIELPLGGlrPAERIEETGRRLTKYCERFRVPFEFNFIASKNWESIKLKDLKIRSDETVAVNSLDWFQNLFDET 104
                   7**************************998899****************************99*************************9****9999 PP

          GRAS 218 vsles 222
                   v+ ++
  EcS506274.20 105 VDDNN 109
                   98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098519.6781110IPR005202Transcription factor GRAS
PfamPF035141.4E-228109IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MSSAVGRLQW PILVQKLSSQ SEGPCKLRIT DIELPLGGLR PAERIEETGR RLTKYCERFR  60
VPFEFNFIAS KNWESIKLKD LKIRSDETVA VNSLDWFQNL FDETVDDNNP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018724301.15e-54PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 34
SwissprotQ3EDH03e-33SCL31_ARATH; Scarecrow-like protein 31
TrEMBLA0A059D5R31e-52A0A059D5R3_EUCGR; Uncharacterized protein
STRINGXP_010046393.12e-56(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07520.11e-35GRAS family protein