PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcS506387.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NAC

Protein Properties

Length: 111aa MW: 13227.4 Da PI: 8.0534

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcS506387.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	90.3	3.4e-28	12	109	1	95
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFh +deel+ +yLk+k+ g++ + ++i+e+d +k+ePw+L + + ++ke++f+++ ++ky ++kr+nr+t +gyWk t k+++++s EcS506387.10 12 LPPGFRFHASDEELLLRYLKPKILGQPdEPYYNIIPEIDACKFEPWELLHifGHMFNSKELFFYCCVKRKYLKSKRANRTTVAGYWKVTSKERRIMS 108 79**********************96556678**********74343334779**********************************98 PP NAM 95 k 95 + EcS506387.10 109 E 109 4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.14E-30	8	109	IPR003441	NAC domain
PROSITE profile	PS51005	29.823	12	111	IPR003441	NAC domain
Pfam	PF02365	5.8E-12	13	104	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 111 aa Download sequence Send to blast
MEDTISEVMS LLPPGFRFHA SDEELLLRYL KPKILGQPDE PYYNIIPEID ACKFEPWELL 60 HIFGHMFNSK ELFFYCCVKR KYLKSKRANR TTVAGYWKVT SKERRIMSED T

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-17	12	109	17	110	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-17	12	109	17	110	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-17	12	109	17	110	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-17	12	109	17	110	NO APICAL MERISTEM PROTEIN
3swm_A	3e-17	12	109	20	113	NAC domain-containing protein 19
3swm_B	3e-17	12	109	20	113	NAC domain-containing protein 19
3swm_C	3e-17	12	109	20	113	NAC domain-containing protein 19
3swm_D	3e-17	12	109	20	113	NAC domain-containing protein 19
3swp_A	3e-17	12	109	20	113	NAC domain-containing protein 19
3swp_B	3e-17	12	109	20	113	NAC domain-containing protein 19
3swp_C	3e-17	12	109	20	113	NAC domain-containing protein 19
3swp_D	3e-17	12	109	20	113	NAC domain-containing protein 19
4dul_A	2e-17	12	109	17	110	NAC domain-containing protein 19
4dul_B	2e-17	12	109	17	110	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010041524.1	5e-71	PREDICTED: protein NTM1-like 9
TrEMBL	A0A059DC67	1e-50	A0A059DC67_EUCGR; Uncharacterized protein
STRING	XP_010030908.1	3e-74	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2315	16	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24590.2	1e-24	TCV-interacting protein