PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcS519746.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Protein Properties

Length: 112aa MW: 13452.4 Da PI: 9.7919

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcS519746.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	62.7	6.1e-20	5	94	1	94
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ff v +++++ ++ l++p +f+++h +k++ +l+ s rsW+vkl+ +++++ +l++GW++Fv++ gL + D++vF+l++r++ ++v EcS519746.10 5 FFRVVMRPSYIQKY-LCVPCEFFRKHVQKNK---QLVTLRYSDRSWQVKLRSYGHRRMAFLSTGWSSFVRETGLHVSDVCVFELIDRNDIMFRV 94 66677777777775.9********54433...355555699****9*******************************987774554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.49E-22	1	97	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	4.9E-25	2	100	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	9.67E-16	4	98	No hit	No description
PROSITE profile	PS50863	11.984	4	100	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.5E-17	5	94	IPR003340	B3 DNA binding domain
SMART	SM01019	2.2E-14	6	98	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 112 aa Download sequence Send to blast
SDHPFFRVVM RPSYIQKYLC VPCEFFRKHV QKNKQLVTLR YSDRSWQVKL RSYGHRRMAF 60 LSTGWSSFVR ETGLHVSDVC VFELIDRNDI MFRVSNFNND GKDLIYIDRD GH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010065668.1	2e-66	PREDICTED: B3 domain-containing protein REM13 isoform X2
TrEMBL	A0A059BBI7	9e-64	A0A059BBI7_EUCGR; Uncharacterized protein
STRING	XP_010065667.1	2e-64	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14804	4	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	9e-14	B3 family protein