PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS521129.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 248aa    MW: 26779.4 Da    PI: 10.3546
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS521129.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.00018182204223
                   EETTTTEEESSHHHHHHHHHH.T CS
       zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                    C++Cg+ F+  +  + H  + H
  EcS521129.10 182 ICHKCGEQFKKLDAVEAHHLSkH 204
                   6*****************98877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280183204IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MPAVWFALKR SLDCKSSRQS DVHEPKSRGL NNIVVRRPRC GCSKSMSHLR DVVHGSKRQA  60
AQKPPSCSPR SIASSEFINP ITHEVVFNNS KCEIKIMGVG GKVGGNHSRS DSTFVGTLHP  120
GTPGPRGQYT VPSSYSCPRS TSTPPRKIGG SSATSGGSRS SGFPKSRTMV GPDAHSGSSV  180
LICHKCGEQF KKLDAVEAHH LSKHAVTELT DGDSSKRIVE IICQTSWLKS EHSSCGHIER  240
VLKVHNMQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010052462.11e-177PREDICTED: uncharacterized protein LOC104441152
TrEMBLA0A059CDF31e-175A0A059CDF3_EUCGR; Uncharacterized protein
STRINGXP_010052462.11e-176(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3553812
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.13e-58C2H2 family protein