PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS524200.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 88aa    MW: 10167.6 Da    PI: 6.5289
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS524200.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS68.41.4e-21285289373
          GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                   ++ ++i+n++a+eg +r+er e +++W +r+++a F++vp++e+a++++k++l +++  g+ +++e++ lvl+Wk++++ ++ aW
  EcS524200.10   2 YIYWKIQNIIAQEGLQRIERLEPKSRWVQRMRNADFRAVPFGEDAVSEVKAMLDEHA-AGWGLKKEEDDLVLTWKGHNVAFAAAW 85 
                   57899****************************************************.8999*********************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098512.482167IPR005202Transcription factor GRAS
PfamPF035144.8E-19285IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
SYIYWKIQNI IAQEGLQRIE RLEPKSRWVQ RMRNADFRAV PFGEDAVSEV KAMLDEHAAG  60
WGLKKEEDDL VLTWKGHNVA FAAAWLPA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010070642.18e-58PREDICTED: scarecrow-like protein 32
SwissprotQ9SN224e-34SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A059B0Y09e-56A0A059B0Y0_EUCGR; Uncharacterized protein
STRINGXP_010070642.13e-57(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2741133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-36GRAS family protein