PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS527675.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bZIP
Protein Properties Length: 131aa    MW: 14953.9 Da    PI: 10.6944
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS527675.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_140.75.1e-132253233
                  XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
        bZIP_1  2 kelkrerrkqkNReAArrsRqRKkaeieeLee 33
                  +++k++rr+++NReAAr+sR+RKk+++++Le 
  EcS527675.10 22 RPDKVQRRLAQNREAARKSRLRKKKYVQQLES 53
                  789***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.6E-42181IPR004827Basic-leucine zipper domain
PfamPF001701.9E-92254IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.7142365IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.88E-82558No hitNo description
Gene3DG3DSA:1.20.5.1701.1E-72562No hitNo description
PROSITE patternPS0003602843IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
YEYVSHESAE NSSSRSDQEA NRPDKVQRRL AQNREAARKS RLRKKKYVQQ LESSRLKLAQ  60
LELELGRARQ QGLFLGNGFD ATHFGFSRTV HSGSSSPKSG NCFGAYLWRP CLTLSKLKLI  120
GIFKAFYDSK H
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010063316.14e-56PREDICTED: transcription factor TGA1 isoform X1
RefseqXP_010063317.14e-56PREDICTED: transcription factor TGA1 isoform X1
RefseqXP_010063318.14e-56PREDICTED: transcription factor TGA1 isoform X1
SwissprotQ392371e-29TGA1_ARATH; Transcription factor TGA1
TrEMBLA0A059BX688e-55A0A059BX68_EUCGR; Uncharacterized protein
STRINGXP_010063316.11e-55(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29762766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65210.63e-31bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Herrera-Vásquez A, et al.
    Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis.
    Plant Mol. Biol. Rep., 2018.
    [PMID:26696694]
  4. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  5. Sun T, et al.
    TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g).
    New Phytol., 2018. 217(1): p. 344-354
    [PMID:28898429]