PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS531726.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 180aa    MW: 20952 Da    PI: 8.3135
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS531726.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM123.12.4e-38121441128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee..vikevdiykvePwdLpkkvka..eekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                   lppG+rF Ptdee + +yLk+++ +++ + ++  ++++vd+y++eP++L +++    + ke++ F++ ++ky +g+r+nr tk+gyWk+tg   +++
  EcS531726.10  12 LPPGCRFLPTDEEFLEHYLKRQILEQPPDKDHpiILPKVDVYDLEPQELSSRFGDmfGGKELFLFCSLKRKYLKGNRSNRRTKTGYWKQTGYPCAIV 108
                   79************************95554422599************96443344789************************************9 PP

           NAM  94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                   s+ +++l+g kktLvf++ + ++g++t+Wvm ey+l
  EcS531726.10 109 SEqSSALMGKKKTLVFHESSMRQGKRTSWVMYEYHL 144
                   9856677****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-399151IPR003441NAC domain
PROSITE profilePS5100538.57312165IPR003441NAC domain
PfamPF023655.5E-2113144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MLNPSAGLLS SLPPGCRFLP TDEEFLEHYL KRQILEQPPD KDHPIILPKV DVYDLEPQEL  60
SSRFGDMFGG KELFLFCSLK RKYLKGNRSN RRTKTGYWKQ TGYPCAIVSE QSSALMGKKK  120
TLVFHESSMR QGKRTSWVMY EYHLNPKFLG NDHDENEVTF QFSFSCTTQL VINNIWDMPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-251114414140Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010065034.22e-52PREDICTED: NAC domain-containing protein 83
TrEMBLA0A059DB688e-68A0A059DB68_EUCGR; Uncharacterized protein
STRINGXP_010065034.11e-52(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19028276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.11e-30NAC domain containing protein 71