PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcS532174.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NF-YB

Protein Properties

Length: 150aa MW: 15579.2 Da PI: 7.0224

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcS532174.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	117.7	5.5e-37	2	66	33	97
NF-YB 33 etvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 + +qecvsefisf+t+easdkcqrekrktingddllwa++tlGfe+yveplkvyl+k+re+egek EcS532174.10 2 NFMQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKFREIEGEK 66 679************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.1E-33	2	76	IPR009072	Histone-fold
Pfam	PF00808	7.6E-14	2	40	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	2.85E-26	3	76	IPR009072	Histone-fold
PRINTS	PR00615	7.9E-22	4	22	No hit	No description
PROSITE pattern	PS00685	0	7	23	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	7.9E-22	23	41	No hit	No description
PRINTS	PR00615	7.9E-22	42	60	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 150 aa Download sequence Send to blast
RNFMQECVSE FISFITGEAS DKCQREKRKT INGDDLLWAM TTLGFEEYVE PLKVYLQKFR 60 EIEGEKTAAL GKPGERSDGG DGSSSIGGGG GGGGVVNSGG GSAGGYGVGG GGGMYGGMMM 120 MGHHVHHAHH QSHHHMYGSG SGGSSGGRPR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1n1j_A	8e-30	4	61	36	93	NF-YB
4awl_B	8e-30	4	61	37	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	8e-30	4	61	37	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002323121.2	5e-53	nuclear transcription factor Y subunit B-3
TrEMBL	B9IH15	1e-51	B9IH15_POPTR; Uncharacterized protein
STRING	POPTR_0016s00780.1	2e-52	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM255	28	229

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	3e-43	nuclear factor Y, subunit B3