PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcS537163.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Protein Properties

Length: 158aa MW: 18113.6 Da PI: 7.1973

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcS537163.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	37.2	5.4e-12	36	87	44	99
-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 44 rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + Wev+l ++ ++++l++GW +Fvk ++ g f+vF+++g s f +v +f+k EcS537163.10 36 QAWEVEL--VRRTDGVWLRRGWPDFVKHYAIEHGHFLVFRYEGGSAF--RVVIFDK 87 78***..99999**************************99999..9999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02362	8.0E-9	36	87	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	2.1E-13	36	88	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.86E-10	36	86	No hit	No description
SuperFamily	SSF101936	7.85E-13	37	88	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	10.955	38	88	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence Send to blast
ILCFHAHHAT GNSKEIREKI WEQSVGLGLP PATQCQAWEV ELVRRTDGVW LRRGWPDFVK 60 HYAIEHGHFL VFRYEGGSAF RVVIFDKSAS EIKYPIITEL PKREENEGDT LVEVFEDHFD 120 RPLRIQSKEL PSSTLLSPPS KKKKTNECLN KQEVGGSS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010026406.1	6e-51	PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1
Refseq	XP_010041490.1	1e-51	PREDICTED: B3 domain-containing protein At3g18960
Refseq	XP_018715839.1	1e-51	PREDICTED: B3 domain-containing transcription factor VRN1
Refseq	XP_018716422.1	5e-51	PREDICTED: B3 domain-containing transcription factor VRN1 isoform X2
TrEMBL	A0A059AZI7	1e-59	A0A059AZI7_EUCGR; Uncharacterized protein
STRING	XP_010026401.1	2e-76	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1591	25	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49475.1	6e-17	B3 family protein