PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS537772.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 223aa    MW: 23907.1 Da    PI: 4.7558
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS537772.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.92.4e-081242448
                     HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqkyl 48
                     W++Ia +++ gRt++++k++w+++l
     EcS537772.10  1 WSLIAGRIP-GRTDNEIKNYWNTHL 24
                     *********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001671.91E-6124No hitNo description
SuperFamilySSF466895.06E-7133IPR009057Homeodomain-like
PROSITE profilePS5129416.596128IPR017930Myb domain
PfamPF002493.4E-6124IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-11139IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
WSLIAGRIPG RTDNEIKNYW NTHLSKKLIS QGIDPRTHKP LNPETQNSSS NPPAKAPPSK  60
AAPRPRSPNP SPISSGLEET SSGSPAILKE NDQIQSADNM EAVNQNGTAT AHGGEASYLP  120
GTQHYHVMGL RSSHGLSNEE EEDLNCCGDD VFSSFLNSLI NEEAFPIQHQ LQQQAVGSSP  180
DSDSLIPMAA APAFGIAAGW DSAIMSSVIN QDNNSRRANE QVE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010044942.11e-159PREDICTED: transcription repressor MYB5
TrEMBLA0A059D9A81e-157A0A059D9A8_EUCGR; Uncharacterized protein
STRINGXP_010044942.11e-158(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.12e-24myb domain protein 5