PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS539206.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 103aa    MW: 11217.5 Da    PI: 9.3813
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS539206.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.4e-055375123
                  EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                  y+C+ C k F ++  L  H++ H
  EcS539206.10 53 YSCNFCQKKFYSSQALGGHQNAH 75
                  99******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.09E-84981No hitNo description
Gene3DG3DSA:3.30.160.606.4E-55179IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.2815380IPR007087Zinc finger, C2H2
PROSITE patternPS0002805575IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MEHQSNPWHQ SSSANNHRQL NLELGLEPCS PSSSSSPASL HPLAVPAKDN KLYSCNFCQK  60
KFYSSQALGG HQNAHKLERT LAKKSRDLCS ASKPPAATSN GHH
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of floral organ abscission. Participates in processes that directly or indirectly influence shedding of floral organs. {ECO:0000269|PubMed:18192438}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010050236.17e-69PREDICTED: zinc finger protein 2
SwissprotQ392613e-20ZFP2_ARATH; Zinc finger protein 2
TrEMBLA0A059CJZ39e-52A0A059CJZ3_EUCGR; Uncharacterized protein
STRINGXP_010050236.13e-68(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66212844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.11e-19zinc finger protein 2