PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcS539336.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

bHLH

Protein Properties

Length: 265aa MW: 29580.1 Da PI: 8.2215

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcS539336.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.5	4.8e-13	106	155	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e Er+RR+++ f+ Lr llP ++K s ++i+ +Av+YIk++q EcS539336.10 106 THRETERQRRQEMAAHFQSLRLLLPLeY---LKGKRSMSDIVYEAVKYIKDMQ 155 8***********************77...9*****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.98E-15	99	174	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.54E-5	100	159	No hit	No description
PROSITE profile	PS50888	13.579	102	154	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.0E-12	104	171	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.0E-10	106	155	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-6	108	160	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MDPNASTIPS DETEDQVLQS ASSTPSHKDD ELLVIAAQQM NHTSSTAPSD ETEDQVSQSA 60 SPLSMIASSQ YGLDLTDRPD YRRWRNSGLS RRDLEKTSPK GEKKFTHRET ERQRRQEMAA 120 HFQSLRLLLP LEYLKGKRSM SDIVYEAVKY IKDMQSKIQK LSDKRDEIKK SESPNSHGTD 180 TSNRLACPSS SSSSSSSGPK NIVIVKSYKR GVEVAISTEP EQGMPLRRVL EVLTGDGLDL 240 INCTSTKVKG RLIHRIESEV VPRTS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010055576.1	1e-169	PREDICTED: transcription factor bHLH120
TrEMBL	A0A059C124	1e-168	A0A059C124_EUCGR; Uncharacterized protein
STRING	XP_010055576.1	1e-169	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM34881	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51790.1	4e-25	bHLH family protein