PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcS547846.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

C3H

Protein Properties

Length: 216aa MW: 24061.7 Da PI: 8.4572

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcS547846.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	39.8	7.7e-13	35	57	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C+++ +tGtCk+G++CkF+H+ EcS547846.10 35 EDCSYYIKTGTCKFGSNCKFNHP 57 89********************9 PP
2	zf-CCCH	25.7	2e-08	81	105	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C++++ G Ck+G C+F+H++ EcS547846.10 81 QTECKYYLNKGGCKFGKACRFNHSR 105 568********************95 PP
3	zf-CCCH	35.6	1.5e-11	126	151	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f++rtG Cky ++C+++H++ EcS547846.10 126 GEKECPFYMRTGSCKYAANCRYNHPE 151 7899********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	14.746	31	59	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.4E-5	31	58	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.66E-7	31	59	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.5E-9	35	57	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.3E-5	37	56	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.003	78	105	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.577	78	106	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.7E-6	81	105	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.19E-6	81	107	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.4E-5	84	105	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.197	124	152	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	7.3E-6	124	151	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.92E-6	126	152	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.6E-8	126	151	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.1E-4	130	150	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
SDGGEKGEDG DSESDDEKRE ERRKFNKYPV RPEAEDCSYY IKTGTCKFGS NCKFNHPVRR 60 KNQVAKDKMK EKEEPKERVG QTECKYYLNK GGCKFGKACR FNHSRPKTFV PPYQGLNFLG 120 LPIRPGEKEC PFYMRTGSCK YAANCRYNHP EPSAGGGDPP SEYGNGGSAS LQSASQFPVA 180 SWSSPGTLND AAPFVPVMYS PTHAVSSHNA EWNGYQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010026830.1	1e-144	PREDICTED: zinc finger CCCH domain-containing protein 43 isoform X1
Refseq	XP_010026837.1	1e-144	PREDICTED: zinc finger CCCH domain-containing protein 43 isoform X2
Swissprot	Q9STM4	5e-75	C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBL	A0A059CZ27	1e-155	A0A059CZ27_EUCGR; Uncharacterized protein
STRING	XP_010026830.1	1e-143	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4176	27	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	9e-71	C3H family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]