PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcS550962.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Protein Properties

Length: 161aa MW: 18408.3 Da PI: 10.3067

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcS550962.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	41.6	2.2e-13	49	159	1	99
EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTH.HHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesg.rsWevkliyrkksgryvltkGW.keFvkangLkegDfvvFkl 84 f+k lt+sd + ++rl + ++f+++h + ++ ++ +++++d + + ++ + ++ +s++yvl++GW keFvk gL +gD v ++ EcS550962.10 49 FKKRLTQSDLGHLSRLLIRRDFLKSHflrwmneetvrQVESGKGADVIVRDMDTcSEHRLVFVFWASSRSYVLKGGWmKEFVKRRGLAAGDEVGIYW 145 899************************98888777545558889999997766778888888*********668*************97 PP -SS.SEE..EEEEE-S CS B3 85 dgr.sefelvvkvfrk 99 d s+f +++v+rk EcS550962.10 146 DAIaSKF--HFSVLRK 159 7655666..8888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	4.51E-16	47	159	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	3.1E-5	49	160	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.2E-9	49	158	IPR003340	B3 DNA binding domain
CDD	cd10017	1.44E-17	49	158	No hit	No description
Gene3D	G3DSA:2.40.330.10	7.3E-17	49	159	IPR015300	DNA-binding pseudobarrel domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
MASLTNAESL IAEKKAKCKR TQKGKKEASG CGAEEVSTEL TLLFDPYKFK KRLTQSDLGH 60 LSRLLIRRDF LKSHFLRWMN EETVRQVESG KGADVIVRDM DTCSEHRLVF VFWASSRSYV 120 LKGGWMKEFV KRRGLAAGDE VGIYWDAIAS KFHFSVLRKA N

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018728844.1	1e-110	PREDICTED: putative B3 domain-containing protein At1g78640
TrEMBL	A0A059C5T8	1e-109	A0A059C5T8_EUCGR; Uncharacterized protein
STRING	XP_010058723.1	1e-104	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM456	9	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33720.1	2e-30	B3 family protein