PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS553303.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 155aa    MW: 17265.6 Da    PI: 7.5313
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS553303.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.82.1e-094268127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                  ++++ C++f++tG Ck+ ++Ck++H++
  EcS553303.20 42 PGQPDCSYFLKTGDCKFKSNCKYHHPK 68
                  5789*********************96 PP
2zf-CCCH35.51.7e-1190114327
                   S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                   +  C +++r+G+Ck+G+ CkF H++
  EcS553303.20  90 QNVCLYYSRYGICKFGPACKFDHPE 114
                   568********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.5684169IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-44168IPR000571Zinc finger, CCCH-type
PfamPF006427.8E-74368IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-64670IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-44768IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-684112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.47487115IPR000571Zinc finger, CCCH-type
SMARTSM003564.6E-587114IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-990114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-492115IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
FPVNPPGPVV RPPSAYIMKH PVTDIHIYPH HQMVIDEFPE RPGQPDCSYF LKTGDCKFKS  60
NCKYHHPKDR ISKSPPVVLS DKGLPLRPDQ NVCLYYSRYG ICKFGPACKF DHPEHLTSST  120
ISELDQPSSI GDSATSDGPL MNGTRNSSEA IQQSV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010026830.11e-107PREDICTED: zinc finger CCCH domain-containing protein 43 isoform X1
SwissprotQ9STM45e-46C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A059CYA51e-106A0A059CYA5_EUCGR; Uncharacterized protein
STRINGXP_010026830.11e-106(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15633917
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.19e-48C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]