PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcS554508.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

GRAS

Protein Properties

Length: 122aa MW: 14265.3 Da PI: 6.2615

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcS554508.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	108.1	1.2e-33	1	119	256	374
GRAS 256 rflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve 352 rf eal ++sa+fd lea++pr++ er +E+e+lg++++nv+aceg++r+er et+++ + r +aGF+++pl++++++ ak l+ ++ + +++e EcS554508.10 1 RFREALFHFSAVFDILEATVPRDDPERLLLEQEILGKQAMNVIACEGSDRIERPETYKSSHVRNLRAGFRQLPLDKDVVSLAKDKLKSCYHKDFEIE 97 8***************************************************************************************889 PP GRAS 353 eesgslvlgWkdrpLvsvSaWr 374 e+ ++l++gWk+r ++++S Wr EcS554508.10 98 EDGQWLLQGWKGRIIYALSTWR 119 *******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	19.011	1	99	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.2E-31	1	119	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 122 aa Download sequence Send to blast
RFREALFHFS AVFDILEATV PRDDPERLLL EQEILGKQAM NVIACEGSDR IERPETYKSS 60 HVRNLRAGFR QLPLDKDVVS LAKDKLKSCY HKDFEIEEDG QWLLQGWKGR IIYALSTWRP 120 DC

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010032388.1	9e-82	PREDICTED: scarecrow-like protein 9 isoform X1
Refseq	XP_018720025.1	6e-82	PREDICTED: scarecrow-like protein 9 isoform X2
Swissprot	O80933	1e-47	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A059ACH2	2e-80	A0A059ACH2_EUCGR; Uncharacterized protein
STRING	XP_010032388.1	4e-81	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15599	6	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	6e-50	GRAS family protein