PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcS556048.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

MYB_related

Protein Properties

Length: 103aa MW: 10603.4 Da PI: 8.7906

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcS556048.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.1	2e-18	45	90	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l ++v ++G+++W++Iar + gR++k+c++rw + EcS556048.10 45 KGPWSPEEDAILSQLVSKFGPRNWSLIARGIA-GRSGKSCRLRWCNQ 90 79****************************.*********985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	26.684	40	95	IPR017930	Myb domain
SuperFamily	SSF46689	3.52E-18	41	101	IPR009057	Homeodomain-like
SMART	SM00717	1.2E-15	44	93	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-17	45	90	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.5E-23	46	101	IPR009057	Homeodomain-like
CDD	cd00167	2.21E-14	47	89	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 103 aa Download sequence Send to blast
ANEVDGADGG GEDXRSGDEA EAAAAGGGND GSGSSGGKAG RDRVKGPWSP EEDAILSQLV 60 SKFGPRNWSL IARGIAGRSG KSCRLRWCNQ LDPAVKRKPF TGK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-17	42	101	4	63	B-MYB
1gv2_A	1e-17	44	101	3	60	MYB PROTO-ONCOGENE PROTEIN
1h88_C	4e-17	44	101	57	114	MYB PROTO-ONCOGENE PROTEIN
1h89_C	4e-17	44	101	57	114	MYB PROTO-ONCOGENE PROTEIN
1mse_C	1e-17	44	101	3	60	C-Myb DNA-Binding Domain
1msf_C	1e-17	44	101	3	60	C-Myb DNA-Binding Domain
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Functional Description ? help Back to Top
Source	Description
UniProt	Required for male gametophyte (pollen) development. {ECO:0000269\|PubMed:22101548}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: May be the target of the microRNA (miRNA) MIR393a. {ECO:0000269\|PubMed:15258262}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010037759.1	3e-63	PREDICTED: myb-related protein A
Swissprot	O04192	6e-27	MYB25_ARATH; Transcription factor MYB25
TrEMBL	A0A059A764	6e-62	A0A059A764_EUCGR; Uncharacterized protein
STRING	XP_010037759.1	1e-62	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM23157	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55730.1	2e-30	myb domain protein 109

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]