PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS556961.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 151aa    MW: 16864.8 Da    PI: 5.2615
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS556961.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.92.8e-1460108155
           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   s+ykGV   + +grW A+I+d      r+r+++g+f  ++eAa a++ a+k+++g
  EcS556961.10  60 SKYKGVVPQP-NGRWGAQIYDN-----RQRVWIGTFSKEDEAALAYDIAAKRFRG 108
                   89****9888.8*********4.....6**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.78E-2660115No hitNo description
SuperFamilySSF541713.14E-1760117IPR016177DNA-binding domain
PfamPF008472.3E-960108IPR001471AP2/ERF domain
PROSITE profilePS5103219.42761116IPR001471AP2/ERF domain
SMARTSM003802.3E-2761122IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.0E-2061117IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MMDGNSICID NLSSTSDSNF IPLPSKSLQP QSLCHLGSGT GVILDCEGAI EAESRKQPSS  60
KYKGVVPQPN GRWGAQIYDN RQRVWIGTFS KEDEAALAYD IAAKRFRGRD AITNFKQRSD  120
TEDCDLEAAF LNSHSKEEIV DMLRKHAYYN E
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018724574.11e-111PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1
SwissprotQ9LS062e-54RAVL4_ARATH; AP2/ERF and B3 domain-containing transcription factor ARF14
TrEMBLA0A058ZSG93e-79A0A058ZSG9_EUCGR; Uncharacterized protein
STRINGXP_010046597.11e-107(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2394033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25730.18e-57ethylene response DNA binding factor 3