PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS558863.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 229aa    MW: 24519.2 Da    PI: 10.5365
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS558863.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.7e-18105155155
           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                   + y+GVr++  +g+WvAeIr+ps    r  r +lg+f ta eAa a+++a+ +++g
  EcS558863.10 105 CNYRGVRQRT-WGKWVAEIREPS----RgSRLWLGTFPTALEAALAYDKAASAMYG 155
                   56*****999.**********84....36**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.3E-13105155IPR001471AP2/ERF domain
CDDcd000185.09E-29105163No hitNo description
Gene3DG3DSA:3.30.730.108.3E-31106163IPR001471AP2/ERF domain
SMARTSM003805.5E-37106169IPR001471AP2/ERF domain
PROSITE profilePS5103221.838106163IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-21106164IPR016177DNA-binding domain
PRINTSPR003676.3E-10107118IPR001471AP2/ERF domain
PRINTSPR003676.3E-10129145IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MESGASSIDQ ISKSAAEILA KWKQYNDKVN SCIQSSDSPS GSSPKSATPP QPPPPPPPAA  60
AAAAAAAAAA AVVAVPVQVP TRRVHAKGSK KGCMKGKGGP ENLRCNYRGV RQRTWGKWVA  120
EIREPSRGSR LWLGTFPTAL EAALAYDKAA SAMYGSFARL NFPLGLSSKD SSKDSSSSTT  180
IAAREKGLTF LCKLSIFVGF WGVPNLGFVF DFCFVQWVLF CRGFLKIRW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-20106168568ATERF1
3gcc_A3e-20106168568ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011460156.15e-51PREDICTED: putative dehydration-responsive element-binding protein 2H
TrEMBLA0A067L8G72e-47A0A067L8G7_JATCU; Uncharacterized protein
TrEMBLA0A3S8T9024e-49A0A3S8T902_FRAAN; Transcription factor ERF28
STRINGXP_004293490.15e-50(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.23e-25DRE-binding protein 2A