PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcS565187.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

GRAS

Protein Properties

Length: 190aa MW: 22328.7 Da PI: 9.534

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcS565187.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	173.9	1.2e-53	2	187	187	373
GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 +++++ +L++++gE+++Vn +++ ++llde+v l+++rd+vL+l+++++P+++v + + + + + F++rf eal +ysalfd+++++l r+++ r EcS565187.10 2 DTIKIGDLKIRNGETIVVNTMFRFKNLLDETVVLNNPRDSVLNLIRKIRPHLFVQAIVNGSFSVPFFVTRFREALFHYSALFDAFDTNLERDNQMRL 98 788999***************************************************************************************** PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 ++E+e++gre+ nv+aceg+er+er et+++W+ r ++aGFk++pl+ +k+ ++ l ++++d + v+e+ +++++gWk+r L + S+W EcS565187.10 99 TYEKEFFGREAINVIACEGTERVERPETYKQWQVRNKRAGFKQLPLDPALMKKLRSKLGEFPDD-FVVDEDGHWMLQGWKGRILRASSCW 187 **********************************************************66.*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	28.798	1	169	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.3E-51	2	187	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
WDTIKIGDLK IRNGETIVVN TMFRFKNLLD ETVVLNNPRD SVLNLIRKIR PHLFVQAIVN 60 GSFSVPFFVT RFREALFHYS ALFDAFDTNL ERDNQMRLTY EKEFFGREAI NVIACEGTER 120 VERPETYKQW QVRNKRAGFK QLPLDPALMK KLRSKLGEFP DDFVVDEDGH WMLQGWKGRI 180 LRASSCWVPT

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010033115.1	1e-129	PREDICTED: scarecrow-like protein 33
Swissprot	Q9XE58	1e-86	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A059AFY6	1e-128	A0A059AFY6_EUCGR; Uncharacterized protein
STRING	XP_010033115.1	1e-129	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15599	6	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	6e-89	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]