PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS566401.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family BES1
Protein Properties Length: 307aa    MW: 34267.4 Da    PI: 6.2637
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS566401.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822158.35.4e-49271642134
        DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslq.ss 97 
                   g+g+++++kE+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+Vl+AL+reAGw+ve+DGttyr++  p     +  +++ +s  s+ +  s
  EcS566401.10  27 GKGKREREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWTVEADGTTYRQSPPPS----QLATFSARSMDSPASaAS 119
                   689******************************************************************776555....666777777777777789 PP

        DUF822  98 lkssalaspvesy.saspksssfpspssldsislasa.......a 134
                   lks+ +++ ++s+ sa+++ ++++sp+slds+ +a++        
  EcS566401.10 120 LKSYGVKTTLDSQpSAVMRMDESLSPASLDSVVIAEKdpksvkyG 164
                   *******999988467899***************98755444441 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056877.0E-5027170IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene3DG3DSA:3.20.20.804.7E-36197307IPR013781Glycoside hydrolase, catalytic domain
SuperFamilySSF514454.96E-31201307IPR017853Glycoside hydrolase superfamily
PfamPF013731.1E-17218305IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.5E-13233247IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.5E-13254272IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.5E-13276297IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
QQQQQQQQRR PRGFAATAAA AATAGPGKGK REREKEKERT KLRERHRRAI TSRMLAGLRQ  60
YGNFPLPARA DMNDVLAALA REAGWTVEAD GTTYRQSPPP SQLATFSARS MDSPASAASL  120
KSYGVKTTLD SQPSAVMRMD ESLSPASLDS VVIAEKDPKS VKYGNASPIN SVIECLDAEQ  180
LIHDVSSVDH QNVFTDTEFV PVYVKLDGTI NNYCQLVDQE VVRQELNHIK SLNADGVVVD  240
CWWGIVEGWN PQRYVWSGYR ELFHIIREFK LKLQVVLAFH EYGGNDSGDF SVSLPQWVLE  300
IGKENED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1fa2_A2e-2419930712121BETA-AMYLASE
5wqs_A2e-2419930712121Beta-amylase
5wqu_A1e-2419930712121Beta-amylase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010054915.10.0PREDICTED: beta-amylase 8
SwissprotQ9FH801e-123BAM8_ARATH; Beta-amylase 8
TrEMBLA0A059CJR30.0A0A059CJR3_EUCGR; Beta-amylase
STRINGXP_010054915.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108882832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.11e-117beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]