PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcS567389.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

bHLH

Protein Properties

Length: 137aa MW: 15138 Da PI: 9.2219

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcS567389.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.4	1.9e-06	107	133	4	30
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 h ++Er+RR+++ ++f L +++P + EcS567389.10 107 EHVIAERKRREKLSQRFIALSSIIPGL 133 699**********************75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.121	103	137	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.78E-6	107	134	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.8E-6	107	133	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.60E-5	108	135	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 137 aa Download sequence Send to blast
MNPFGYSLTE SGFNQFSSFS SASTYSPNQI QNVGHLSDVP IATECKNPQT KPSPPSNSQI 60 ICFQNSDLSP DMSQQYSGTY ELQDGGGMKM KRSCGVKFSR TTLHGQEHVI AERKRREKLS 120 QRFIALSSII PGLTKVL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	111	116	ERKRRE
2	112	117	RKRREK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010023400.1	4e-65	PREDICTED: transcription factor bHLH18-like
TrEMBL	A0A059B0U3	4e-75	A0A059B0U3_EUCGR; Uncharacterized protein (Fragment)
STRING	XP_010023400.1	2e-64	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	5e-14	bHLH family protein