PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS570676.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 254aa    MW: 28717.9 Da    PI: 6.9636
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS570676.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39e-19140192156
           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                   s+y+GVr ++ +g+++AeIrdp++n  ++r +lg+f t+ eAa a+++a+ +++g+
  EcS570676.10 140 SRYRGVRKRP-WGKYAAEIRDPKKN--SARRWLGTFETPREAALAYDQAAFAMRGA 192
                   79********.**********9887..5*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.95E-30140201No hitNo description
SuperFamilySSF541714.51E-22140200IPR016177DNA-binding domain
PfamPF008471.2E-12140191IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-31141200IPR001471AP2/ERF domain
PROSITE profilePS5103222.958141199IPR001471AP2/ERF domain
SMARTSM003809.0E-34141205IPR001471AP2/ERF domain
PRINTSPR003675.7E-13142153IPR001471AP2/ERF domain
PRINTSPR003675.7E-13181201IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
IPSSFNSRHG IVRTEPYSVP NLVFFSPPFR INMSATSSTI SDTDAALLER IRQHLLNDDD  60
FETLAKTAQN VRFHCPNSSF DTFSSAETTM WFEATDYDDI GIYHEHPKDA VGSKSPSSSN  120
EQPVMDYGDV QANEALSEGS RYRGVRKRPW GKYAAEIRDP KKNSARRWLG TFETPREAAL  180
AYDQAAFAMR GAKARLNFPH LIGCDEVEPV RVTRKQHRST KAESSSLDPK WRKEDLIGLA  240
SDPHELNSFL LSFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-27137206170ATERF1
3gcc_A9e-27137206170ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018728767.11e-163PREDICTED: ethylene-responsive transcription factor 1-like
TrEMBLA0A059C5A39e-97A0A059C5A3_EUCGR; Uncharacterized protein
STRINGXP_010058510.11e-106(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.14e-38ethylene-responsive element binding factor 13