PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS577108.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 201aa    MW: 23420.6 Da    PI: 10.3165
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS577108.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM67.53.8e-212610754128
           NAM  54 eekewyfFskrdkkyatgkrknra......tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                   + +  +fF++ +k+yatg+rk+r        ++ +W++tgk+++vl+ ++ ++g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  EcS577108.10  26 DGQIRHFFHRPAKAYATGTRKRRRvhksadERETRWHKTGKTRSVLA-GRVVKGFKKILVLYnnYGRQRKPEKTNWVMHQYHL 107
                   34455******************635555444889************.999***********65579**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100521.5231126IPR003441NAC domain
SuperFamilySSF1019412.88E-2224126IPR003441NAC domain
PfamPF023654.2E-831107IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MTLNFHALKI SFECLFYVHH AGVSKDGQIR HFFHRPAKAY ATGTRKRRRV HKSADERETR  60
WHKTGKTRSV LAGRVVKGFK KILVLYNNYG RQRKPEKTNW VMHQYHLGKS EEERDGELVV  120
SKVFHQTQPR RPSSTNLREP KDTMPKSDQR LNENDHVLRS SIEVIGYNSN SPCDVSYDQL  180
FIPNFAVHGE AAFLDPLLEY S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14448RKRRR
24549KRRRV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010052264.11e-128PREDICTED: NAC domain-containing protein 73
SwissprotO494592e-56NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A059CCV51e-105A0A059CCV5_EUCGR; Uncharacterized protein
STRINGXP_010052264.11e-127(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20122881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.17e-59NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]