PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcS581303.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

M-type_MADS

Protein Properties

Length: 133aa MW: 14564.6 Da PI: 8.7892

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcS581303.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	63.2	2.9e-20	5	51	5	51
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ++s ++tf+kRrn ++KKA+ LS LCdaev +i+fs tg+lyeyss EcS581303.10 5 SSSSDHITFAKRRNWLMKKAKDLSQLCDAEVGIIVFSCTGQLYEYSS 51 678889***************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	19.063	1	53	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.4E-11	4	52	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.1E-17	6	49	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.05E-17	7	53	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-13	15	30	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-13	30	51	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 133 aa Download sequence Send to blast
MNPHSSSSDH ITFAKRRNWL MKKAKDLSQL CDAEVGIIVF SCTGQLYEYS SSRSVCINRF 60 DSPCLPLPSS HMRARTPARA RTNHDTCACA SSSCSFGCHS GATFSSMSGL ISEMTTLLRL 120 TPSFRVITIG STF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018717722.1	1e-29	PREDICTED: MADS-box transcription factor 27 isoform X3
TrEMBL	A0A059ATD0	2e-27	A0A059ATD0_EUCGR; Uncharacterized protein
STRING	XP_010029960.1	5e-28	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM78	28	413

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57230.2	1e-17	AGAMOUS-like 16