PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS585404.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 225aa    MW: 25645.9 Da    PI: 7.3118
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS585404.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.53.4e-20351141398
                   TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
            B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                   +++l +pkkfae+  +k   +  ++l+ +sg +W+v       ++  +++ GW++Fvk++ L+ +D++vF+++g+s+f  +v vf+
  EcS585404.10  35 HQQLAIPKKFAENLRSK--LPENVVLKGPSGATWKVGT--VADDENLLFKHGWQDFVKDHALEKNDILVFRYNGESSF--NVLVFN 114
                   678********777655..6678***************..999999****************************9999..777775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086314.76223116IPR003340B3 DNA binding domain
SuperFamilySSF1019364.71E-2224115IPR015300DNA-binding pseudobarrel domain
CDDcd100175.15E-1925114No hitNo description
Gene3DG3DSA:2.40.330.102.9E-2425115IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.5E-1726116IPR003340B3 DNA binding domain
PfamPF023622.7E-1735113IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
QMEGTCKECK SWEEEIYWTH FHSIHFCQFL QGDFHQQLAI PKKFAENLRS KLPENVVLKG  60
PSGATWKVGT VADDENLLFK HGWQDFVKDH ALEKNDILVF RYNGESSFNV LVFNQHSLCE  120
KEAAYFHKRC SHNPTDRECG TKRKLGDSSV EAMHTPVSHD VKRTLTEDPW EDRTVTVADR  180
NILSQAKASE NLIEAGASGK PRNKKATPKK KLSVAFDCLE EKPGT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010059786.11e-164PREDICTED: B3 domain-containing protein REM16 isoform X4
SwissprotQ8RYD12e-46REM16_ARATH; B3 domain-containing protein REM16
TrEMBLA0A059BJD01e-162A0A059BJD0_EUCGR; Uncharacterized protein
STRINGXP_010059782.11e-161(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM104282335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-48B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]