PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS587627.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 43aa    MW: 4815.5 Da    PI: 8.9336
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS587627.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.43.4e-081436123
                     TSSS-HHHHHHHHHHHHHTTTT- CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggt 23
                     +g+WT+eEd++l+ +++ +G g+
     EcS587627.10 14 KGAWTKEEDDKLIAYIRAHGEGC 36
                     79******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-10538IPR009057Homeodomain-like
SuperFamilySSF466891.87E-5936IPR009057Homeodomain-like
PROSITE profilePS5129410.507943IPR017930Myb domain
PfamPF002496.9E-61435IPR001005SANT/Myb domain
CDDcd001675.35E-41636No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 43 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDDKLIAYIR AHGEGCRRSL PKA
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010066271.12e-22PREDICTED: myb-related protein 308
SwissprotP813934e-23MYB08_ANTMA; Myb-related protein 308
TrEMBLA0A2G9FVQ96e-22A0A2G9FVQ9_9LAMI; Uncharacterized protein
TrEMBLA0A2H5MW446e-22A0A2H5MW44_CITUN; Uncharacterized protein
STRINGXP_010066271.19e-22(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.16e-24myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]