PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS589601.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 115aa    MW: 13692.8 Da    PI: 7.4539
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS589601.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS93.43.6e-293112264373
          GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvl 360
                    sal+d+++  l  +s+er + Ere+ grei+nv+aceg+er+er et ++W+ r ++aGFk++pl+++ +k  ++ ++ ++ + + ++e+ ++++l
  EcS589601.10   3 LSALYDMYDFILDGDSKERLVFEREFHGREIMNVIACEGTERVERPETHKQWQVRHMRAGFKALPLDQELMKLFRSKMKACYHKDFGLNEDGNWMLL 99 
                   589*******************************************************************************888************ PP

          GRAS 361 gWkdrpLvsvSaW 373
                   gW++r ++  S+W
  EcS589601.10 100 GWRGRIVFCSSCW 112
                   ************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098516.787193IPR005202Transcription factor GRAS
PfamPF035141.3E-263112IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
FQLSALYDMY DFILDGDSKE RLVFEREFHG REIMNVIACE GTERVERPET HKQWQVRHMR  60
AGFKALPLDQ ELMKLFRSKM KACYHKDFGL NEDGNWMLLG WRGRIVFCSS CWVPA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018724299.15e-76PREDICTED: scarecrow-like protein 34
RefseqXP_018724300.15e-76PREDICTED: scarecrow-like protein 34
SwissprotQ3EDH04e-46SCL31_ARATH; Scarecrow-like protein 31
TrEMBLA0A059D4Z41e-74A0A059D4Z4_EUCGR; Uncharacterized protein
STRINGXP_010046395.12e-73(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3259522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07520.12e-48GRAS family protein