PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS594681.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family M-type_MADS
Protein Properties Length: 177aa    MW: 19804.6 Da    PI: 7.5062
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS594681.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.11.5e-201963145
                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                  k ienk +r+vtfskR  g++ KA+EL +LC+aeva+i +s++g+
  EcS594681.10 19 KIIENKNKREVTFSKRHRGMFRKASELAILCGAEVAIITYSPHGN 63
                  579***************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.4E-241170IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.5951171IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.8E-251281IPR002100Transcription factor, MADS-box
PRINTSPR004048.1E-171333IPR002100Transcription factor, MADS-box
PfamPF003198.7E-222167IPR002100Transcription factor, MADS-box
PRINTSPR004048.1E-173348IPR002100Transcription factor, MADS-box
PRINTSPR004048.1E-174869IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MAMAEAKKKS QGRRRVECKI IENKNKREVT FSKRHRGMFR KASELAILCG AEVAIITYSP  60
HGNPFVFGHP GVDAVINRYM PDGVVTEANE AAAAAAALRA VDKHKKQYQD AMSELEEVRM  120
AEVDAGKRRA AGNSEGQMWW NENVDDIMGV EELDFYADSL ERLMKMVADR VDNKPCA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010058863.11e-117PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A059C6A31e-116A0A059C6A3_EUCGR; Uncharacterized protein
STRINGXP_010058863.11e-117(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-26AGAMOUS-like 62