PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS596925.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family SBP
Protein Properties Length: 234aa    MW: 25697 Da    PI: 7.339
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS596925.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP73.43.8e-23187234148
                   --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS
           SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 
                   +CqvegC+ dls+ak+yhr+h+vCe hsk+p+v+vsg+e+rfCqqCsr
  EcS596925.10 187 RCQVEGCNLDLSSAKDYHRKHRVCESHSKCPKVIVSGIERRFCQQCSR 234
                   6**********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.7E-23181234IPR004333Transcription factor, SBP-box
PROSITE profilePS5114121.179185234IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.49E-22186234IPR004333Transcription factor, SBP-box
PfamPF031102.7E-17188234IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MSAISLMEWN AKPPLQWEWE NLMMFGSKAT ETSKPLRATD WGIEAEELID PGSLFLYENG  60
GGSSSCTSID PGYTSVSKSS KSASVNSSST DELKISKFSV EAHEGFSLQS SKKELAVNDF  120
TGMSPALEPS VCSGEPLLSL KLGKRIYFEN TIDKDHVKTQ DLPSVMKSPD TPAKRNKSSC  180
QGTSAPRCQV EGCNLDLSSA KDYHRKHRVC ESHSKCPKVI VSGIERRFCQ QCSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj0_A2e-16184234252squamosa promoter-binding protein-like 12
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010044819.11e-170PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_010044820.11e-170PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_018724685.11e-170PREDICTED: squamosa promoter-binding-like protein 2
TrEMBLA0A059D8Q51e-169A0A059D8Q5_EUCGR; Uncharacterized protein
TrEMBLL7Z7M61e-169L7Z7M6_EUCCD; SPL2-like protein
STRINGXP_010044819.11e-169(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65622644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.33e-49squamosa promoter binding protein-like 2