PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcS597193.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

C2H2

Protein Properties

Length: 172aa MW: 18771.8 Da PI: 9.2311

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcS597193.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.7	0.00039	92	114	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F+ L H+r+H EcS597193.10 92 HECSICGLEFPMGQALGGHMRRH 114 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.38E-8	41	114	No hit	No description
PROSITE profile	PS50157	10.596	43	70	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.5E-10	43	68	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.54	43	65	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	45	65	IPR007087	Zinc finger, C2H2
Pfam	PF13912	4.1E-12	91	116	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.182	92	119	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.12	92	114	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	94	114	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MVKRDREDAE VEALAVANCL MLLPRVGGCA DSNRESRSTE RMFACKTCNR EFSSFQALGG 60 HRTSHKKQKL IPGGLFHLGC TADSSPAKPK RHECSICGLE FPMGQALGGH MRRHRATMAE 120 SLAAEAAKPV PVLKRSNSKR VMGLDLNSSL TEDDLTLRLG KVAPPLVLDL FL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010043589.1	1e-117	PREDICTED: zinc finger protein ZAT8
TrEMBL	M9Z0U5	1e-116	M9Z0U5_EUCGR; C2H2-type zinc finger protein 2
STRING	XP_010043589.1	1e-117	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM531	28	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G46080.1	2e-34	C2H2 family protein