PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS607143.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 185aa    MW: 21139.2 Da    PI: 9.1755
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS607143.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.92.3e-1075180396
                   EE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTH.HHHHHHHT--TT-EEEEEE-S CS
            B3   3 kvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltled.esgrsWevkliyrkksgryvltkGW.keFvkangLkegDfvvFkldg 86 
                   k lt+sd + ++rl + ++ +++h           + ++ ++ +++++d  +g + ++ + ++ +sg y l++GW keFvk   L++gD v ++  +
  EcS607143.10  75 KRLTQSDLGHLSRLLIGRDLVKSHflrwmdeetvrQVESGKGADVIVRDmDTGSEHRLVFVFWTSSGCYALKGGWiKEFVKRRALEVGDEVGIY--W 169
                   889*************************9988887555568999*****8899999999999*************999**************99..6 PP

                   S.SEE..EEEE CS
            B3  87 r.sefelvvkv 96 
                   + se+++++++
  EcS607143.10 170 DpSERKFHFSL 180
                   66777777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-1473179IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-1573179IPR015300DNA-binding pseudobarrel domain
CDDcd100177.14E-1774181No hitNo description
PfamPF023621.7E-775179IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
LDQNTKEVSR PRREVVPAQP KRKSTASLTN AESLIAEKKA KCERTQKGKK EASGCDAEEV  60
STELTLVFDP YKVKKRLTQS DLGHLSRLLI GRDLVKSHFL RWMDEETVRQ VESGKGADVI  120
VRDMDTGSEH RLVFVFWTSS GCYALKGGWI KEFVKRRALE VGDEVGIYWD PSERKFHFSL  180
LHMVD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010058716.11e-110PREDICTED: uncharacterized protein LOC104446575
TrEMBLA0A059C5M01e-111A0A059C5M0_EUCGR; Uncharacterized protein
STRINGXP_010041366.11e-128(Eucalyptus grandis)
STRINGXP_010058726.11e-128(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM456952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33720.15e-28B3 family protein