PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS607863.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 89aa    MW: 10313.8 Da    PI: 9.5061
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS607863.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.42.3e-1727918100
                   --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-SS CS
            B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrks 100
                   +pk+f++++g++   s  + l+ + g +W+++l  +++ ++++l+kGW+eF +   +  g f+vFk++++s+f  +v +f+ks
  EcS607863.10   2 IPKNFLRRCGKD--LSNSVLLKVPGGSTWTIELE-KRNHDMVLLGKGWREFMEHYSIGYGHFIVFKYKENSTF--HVIIFDKS 79 
                   9********977..8889***************5.666678**************************998999..**999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086314.861179IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-21279IPR015300DNA-binding pseudobarrel domain
CDDcd100177.09E-16277No hitNo description
SMARTSM010195.1E-9279IPR003340B3 DNA binding domain
PfamPF023622.2E-14278IPR003340B3 DNA binding domain
SuperFamilySSF1019361.61E-20286IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
GIPKNFLRRC GKDLSNSVLL KVPGGSTWTI ELEKRNHDMV LLGKGWREFM EHYSIGYGHF  60
IVFKYKENST FHVIIFDKSA SEIDYSSSR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018733252.14e-55PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1
RefseqXP_018733254.12e-55PREDICTED: B3 domain-containing transcription factor VRN1 isoform X3
TrEMBLA0A059BC504e-50A0A059BC50_EUCGR; Uncharacterized protein
STRINGXP_010065902.16e-51(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15912578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.17e-19B3 family protein