PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS623098.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 202aa    MW: 22440.4 Da    PI: 10.0635
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS623098.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS53.54.8e-1742130191
          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                   l++lL+ cA+a+s+ d++ a+ lL+++++ +sp+g+  qR+a+yf+ AL+arla+   + ++a+  s  ++++++++l+a++l + ++P+ 
  EcS623098.10  42 LRSLLILCARALST-DFKTARGLLKQIRQDSSPSGNGSQRVAHYFADALEARLAG-NAGRSQAFYYSVIQKRSVADKLKAYQLQYSACPMA 130
                   6899*******998.9**************************************9.77777888888888889****************86 PP
2GRAS25.81.3e-08160201154195
          GRAS 154 skeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                    +e++++tg+rLak++e+++++fef+++++ ++e++++ +L+
  EcS623098.10 160 PTEKIKQTGHRLAKYCERFNITFEFQAVASASWECIKVADLK 201
                   6899***********************9999*******9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098511.35916202IPR005202Transcription factor GRAS
PfamPF035141.7E-1442130IPR005202Transcription factor GRAS
PfamPF035144.3E-6160201IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
KNGGLLSLEC KSEKLSEIKD PQDPNGTGDH SNKKGNDSTL DLRSLLILCA RALSTDFKTA  60
RGLLKQIRQD SSPSGNGSQR VAHYFADALE ARLAGNAGRS QAFYYSVIQK RSVADKLKAY  120
QLQYSACPMA NPYPRAFKEN WRGSKAANHR NRTSTTGFCP TEKIKQTGHR LAKYCERFNI  180
TFEFQAVASA SWECIKVADL KI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010043520.12e-95PREDICTED: scarecrow-like protein 34
RefseqXP_018724289.12e-95PREDICTED: scarecrow-like protein 34
RefseqXP_018724290.12e-95PREDICTED: scarecrow-like protein 34
RefseqXP_018724291.12e-95PREDICTED: scarecrow-like protein 34
SwissprotQ9XE584e-35SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A059D4712e-95A0A059D471_EUCGR; Uncharacterized protein
TrEMBLA0A059D4N03e-94A0A059D4N0_EUCGR; Uncharacterized protein
STRINGXP_010043520.17e-95(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.12e-37SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]