PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS626816.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 173aa    MW: 19203.9 Da    PI: 6.5034
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS626816.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS190.98.1e-599161220374
          GRAS 220 leserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWr 316
                    + ++ +vL  ++sl+Pk+v+v+eqea+hn++ Fl+rf+eal+yys+lfdslea  p   + ++ + +++l+rei+n+v cega+r+erhe l +Wr
  EcS626816.10   9 RDPPIGSVLPWIRSLNPKIVTVAEQEANHNRPGFLDRFTEALYYYSTLFDSLEAACP--VQPDKALAEMYLQREICNIVGCEGAARVERHEPLDRWR 103
                   5556789************************************************75..45667788899*************************** PP

          GRAS 317 erleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   +rl++aGF+p++l+++a kqa++ll  ++ +gy+vee++g+l+l+W++rpL+++SaW+
  EcS626816.10 104 ARLGRAGFRPLHLGSNAFKQASMLLTLFSIEGYSVEENEGCLTLCWHSRPLIAASAWQ 161
                   *********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098525.7181141IPR005202Transcription factor GRAS
PfamPF035142.8E-569161IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
RLLGSDPPRD PPIGSVLPWI RSLNPKIVTV AEQEANHNRP GFLDRFTEAL YYYSTLFDSL  60
EAACPVQPDK ALAEMYLQRE ICNIVGCEGA ARVERHEPLD RWRARLGRAG FRPLHLGSNA  120
FKQASMLLTL FSIEGYSVEE NEGCLTLCWH SRPLIAASAW QAAPTVVNSP AGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-2420160238378Protein SCARECROW
5b3h_A1e-2420160237377Protein SCARECROW
5b3h_D1e-2420160237377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010049952.11e-121PREDICTED: DELLA protein GAI
SwissprotQ6EI064e-63GAIP_CUCMA; DELLA protein GAIP
SwissprotQ8S4W74e-63GAI1_VITVI; DELLA protein GAI1
TrEMBLA0A059CXT51e-120A0A059CXT5_EUCGR; Uncharacterized protein
STRINGXP_010049952.11e-120(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83728121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.15e-63GRAS family protein