PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcS628566.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NAC

Protein Properties

Length: 200aa MW: 22311.3 Da PI: 8.8089

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcS628566.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	79.3	8.8e-25	18	96	50	128
NAM 50 kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++++++++fF++ ++++a+g r++r+t+ gyWkatg+ +v+s++++++g+kk++vfy g+ap+g+kt+W ++eyr+ EcS628566.10 18 MCREDKEQCFFFAPMQERQARGGRPSRSTAVGYWKATGSPCQVYSSENKVIGMKKSMVFYVGKAPTGRKTKWKLNEYRA 96 445566799********************************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	26.294	1	129	IPR003441	NAC domain
SuperFamily	SSF101941	3.66E-24	13	128	IPR003441	NAC domain
Pfam	PF02365	1.6E-10	24	95	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
DFSCGVVCLV AAELSGEMCR EDKEQCFFFA PMQERQARGG RPSRSTAVGY WKATGSPCQV 60 YSSENKVIGM KKSMVFYVGK APTGRKTKWK LNEYRAIEII SPPAPNSSSS SVPMFRLRHE 120 FTLCRVYVVS GSSRAFDRRP LKLVARETIQ DGDGGGRSSG ESASPSGSVV ENNVGISHFM 180 KTISMEKEEP IWDWEQLNWF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-20	23	134	70	170	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-20	23	134	70	170	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-20	23	134	70	170	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-20	23	134	70	170	NO APICAL MERISTEM PROTEIN
3swm_A	9e-20	23	134	73	173	NAC domain-containing protein 19
3swm_B	9e-20	23	134	73	173	NAC domain-containing protein 19
3swm_C	9e-20	23	134	73	173	NAC domain-containing protein 19
3swm_D	9e-20	23	134	73	173	NAC domain-containing protein 19
3swp_A	9e-20	23	134	73	173	NAC domain-containing protein 19
3swp_B	9e-20	23	134	73	173	NAC domain-containing protein 19
3swp_C	9e-20	23	134	73	173	NAC domain-containing protein 19
3swp_D	9e-20	23	134	73	173	NAC domain-containing protein 19
4dul_A	9e-20	23	134	70	170	NAC domain-containing protein 19
4dul_B	9e-20	23	134	70	170	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010034224.1	1e-99	PREDICTED: NAC domain-containing protein 90
Swissprot	Q9FMR3	2e-58	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A059AAM4	1e-119	A0A059AAM4_EUCGR; Uncharacterized protein
STRING	XP_010034224.1	4e-99	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1445	28	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44350.2	8e-59	NAC domain containing protein 61

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]