PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS632222.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 151aa    MW: 17446.9 Da    PI: 8.4586
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS632222.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM79.95.4e-2551301128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                   lp G+rF P+d++ +++ L++kv+g+ +   e i+e+d+y+ ePw++    k+ e++ y F+k + k+   +r +r++ sgyW+   +  +v++ ++
  EcS632222.10   5 LPIGYRFCPSDKQAISYCLAPKVKGDVVFP-ELIHEFDVYEKEPWKFFD--KNAEESFYVFTKLKMKK---SRVERTAGSGYWRGAQS-SDVKDCHD 94 
                   699**********************99555.78**************62..33456678888877764...69***********7654.67777789 PP

           NAM  98 elvglkktLvfy.....kgrapkgektdWvmheyrl 128
                   +++glkk L f      + +++++ek +W+mhey++
  EcS632222.10  95 NVIGLKKHLNFKvkdgsSSNSQNTEKGSWIMHEYSV 130
                   9***********887665677888999*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.11E-274140IPR003441NAC domain
PROSITE profilePS5100528.0595151IPR003441NAC domain
PfamPF023656.7E-186130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MADTLPIGYR FCPSDKQAIS YCLAPKVKGD VVFPELIHEF DVYEKEPWKF FDKNAEESFY  60
VFTKLKMKKS RVERTAGSGY WRGAQSSDVK DCHDNVIGLK KHLNFKVKDG SSSNSQNTEK  120
GSWIMHEYSV PNQEVSRIHL FFVNLLIPQV F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-15413019145NAC domain-containing protein 19
3swm_B2e-15413019145NAC domain-containing protein 19
3swm_C2e-15413019145NAC domain-containing protein 19
3swm_D2e-15413019145NAC domain-containing protein 19
3swp_A2e-15413019145NAC domain-containing protein 19
3swp_B2e-15413019145NAC domain-containing protein 19
3swp_C2e-15413019145NAC domain-containing protein 19
3swp_D2e-15413019145NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010042381.12e-96PREDICTED: NAC domain-containing protein 101-like
TrEMBLA0A059BX481e-98A0A059BX48_EUCGR; Uncharacterized protein
STRINGXP_010042381.19e-96(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13343727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15500.19e-17NAC domain containing protein 3