PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS632340.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 91aa    MW: 10358.8 Da    PI: 7.4401
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS632340.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.31.4e-182781898
                  --HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
            B3 18 lpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                  lp  fae+h +g++     ++l++++g++W v++ yr+++    l++GW +F  +n+L+egD++vF+l++ +e  l v+vfr
  EcS632340.10  2 LPSCFAEKHlNGVSG---FIKLQSTDGKQWPVRCLYRGGR--AKLSQGWYDFSLENNLEEGDVCVFELMRAREVVLQVTVFR 78
                  8999*****877743...5***************665555..66*************************9988889999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100179.29E-20178No hitNo description
PROSITE profilePS5086315.002180IPR003340B3 DNA binding domain
PfamPF023622.2E-16178IPR003340B3 DNA binding domain
SuperFamilySSF1019362.09E-21178IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.3E-21178IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.7E-9180IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
YLPSCFAEKH LNGVSGFIKL QSTDGKQWPV RCLYRGGRAK LSQGWYDFSL ENNLEEGDVC  60
VFELMRAREV VLQVTVFRVV EEGGLLSHHG R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-3818165144B3 domain-containing transcription factor VRN1
4i1k_B2e-3818165144B3 domain-containing transcription factor VRN1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010066068.12e-60PREDICTED: B3 domain-containing transcription factor VRN1
SwissprotQ8L3W13e-38VRN1_ARATH; B3 domain-containing transcription factor VRN1
TrEMBLA0A059BCA82e-59A0A059BCA8_EUCGR; Uncharacterized protein
STRINGXP_010066068.17e-60(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112428103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-40B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Kumar A,Singh A,Panigrahy M,Sahoo PK,Panigrahi KCS
    Carbon nanoparticles influence photomorphogenesis and flowering time in Arabidopsis thaliana.
    Plant Cell Rep., 2018. 37(6): p. 901-912
    [PMID:29541883]